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中生网 > 生物软件 > RNA分析 > PseudoViewer 3

PseudoViewer 3

  • 相关栏目:生物软件/RNA分析
  • 软件类别:简体中文/国产软件
  • 授权方式:免费版
  • 软件大小:33MB
  • 运行环境:Win9x/Win2000/WinXP/Win2003/Win7
  • 更新时间:2014年03月17日
  • 软件来源:互联网
  • 下载次数:
软件简介[Introduction]:
RNA二级结构显示软件。若要运行该软件,需要先下载 Microsoft .NET Framework Version 4.0或更高版本。

无法下载的请点击这里:http://wilab.inha.ac.kr/pseudoviewer/

Visualizing RNA secondary structures and pseudoknot structures is essential to bioinformatics systems that deal with RNA structures. However, many bioinformatics systems use heterogeneous data structures and incompatible software components, so integration of software components into a system can be hindered by incompatibilities between the components of the system. We developed a new XML web service and web application program for visualizing RNA secondary structures with pseudoknots. Experimental results show that the PseudoViewer web service and web application are useful for resolving many problems with incompatible software components as well as for visualizing large-scale RNA secondary structures with pseudoknots of any type.

Examples
#Tetrahymena Group I Intron
1
UAAAUAGCAAUAUUUACCUUUGGAGGGAAAAGUUAUCAGGCAUGCACCUG
GUAGCUAGUCUUUAAACCAAUAGAUUGCAUCGGUUUAAAAGGCAAGACCG
UCAAAUUGCGGGAAAGGGGUCAACAGCCGUUCAGUACCAAGUCUCAGGGG
AAACUUUGAGAUGGCCUUGCAAAGGGUAUGGUAAUAAGCUGACGGACAUG
GUCCUAACCACGCAGCCAAGUCCUAAGUCAACAGAUCUUCUGUUGAUAUG
GAUGCAGUUCACAGACUAAAUGUCGGUCGGGGAAGAUGUAUUCUUCUCAU
AAGAUAUAGUCGGACCUCUCCUUAAUGGGAGCUAGCGGAUGAAGUGAUGC
AACACUGGAGCCGCUGGGAACUAAUUUGUAUGCGAAAGUAUAUUGAUUAG
UUUUGGAGUACUCGUAAGGUA

((((..............))))(((((...((((((((((......))))
)))))).((((((((((((((.......)))))))))).))))..(((((
(((...((((((....(((......((((.(((((((((((((((((((.
...)))))))))))(((.....)))....)))....).))))))))....
.)))...)).))))(((..((((...((((((((.....))))))))..)
)))..)))...[.[[[[[..))))))))((((((((.....)))))))).
......]]]]]]((...(((((....)))))(((((((....((((....
..))))....))))))).(((((((((((((((....)))))))))))))
)).........))........

#exon
1
/CUCUC
/)))))
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